Detailed information of SNP:
|
SNP ID:
sf0610072156(Gbrowse)
Chromosome: chr06 Position: 10072156 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1354 | 95.72% | 4.28% |
| All Indica | 736 | 92.53% | 7.47% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 354 | 94.35% | 5.65% |
| Indica II | 209 | 90.43% | 9.57% |
| Indica Intermediate | 173 | 91.33% | 8.67% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610072156 | G->A | LOC_Os06g17380(LOC_Os06g17380.1) | INTRON |