Detailed information of SNP:
|
SNP ID:
sf0610072623(Gbrowse)
Chromosome: chr06 Position: 10072623 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 79.29% | 20.71% |
| All Indica | 783 | 71.26% | 28.74% |
| All Japonica | 496 | 89.52% | 10.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 78.80% | 21.20% |
| Indica II | 211 | 75.83% | 24.17% |
| Indica Intermediate | 204 | 52.94% | 47.06% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 62.37% | 37.63% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610072623 | G->T | LOC_Os06g17380(LOC_Os06g17380.1) | INTRON |