Detailed information of SNP:
|
SNP ID:
sf0610074228(Gbrowse)
Chromosome: chr06 Position: 10074228 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 60.78% | 39.22% |
| All Indica | 798 | 61.28% | 38.72% |
| All Japonica | 496 | 55.85% | 44.15% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 71.12% | 28.88% |
| Indica II | 213 | 64.79% | 35.21% |
| Indica Intermediate | 211 | 40.28% | 59.72% |
| Temperate Japonica | 335 | 50.45% | 49.55% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610074228 | C->T | LOC_Os06g17380(LOC_Os06g17380.1) | Synonymous |