Detailed information of SNP:
|
SNP ID:
sf0610074483(Gbrowse)
Chromosome: chr06 Position: 10074483 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1313 | 58.11% | 41.89% |
| All Indica | 703 | 95.31% | 4.69% |
| All Japonica | 489 | 11.66% | 88.34% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 334 | 96.41% | 3.59% |
| Indica II | 207 | 99.03% | 0.97% |
| Indica Intermediate | 162 | 88.27% | 11.73% |
| Temperate Japonica | 334 | 3.89% | 96.11% |
| Tropical Japonica | 91 | 36.26% | 63.74% |
| Japonica Intermediate | 64 | 17.19% | 82.81% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610074483 | T->G | INTERGENIC | None |