Detailed information of SNP:
|
SNP ID:
sf0610081556(Gbrowse)
Chromosome: chr06 Position: 10081556 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 92.32% | 7.68% |
| All Indica | 799 | 91.24% | 8.76% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610081556 | G->A | LOC_Os06g17390(LOC_Os06g17390.1) | UTR_3_PRIME |