Detailed information of SNP:
|
SNP ID:
sf0610086326(Gbrowse)
Chromosome: chr06 Position: 10086326 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 57.53% | 42.47% |
| All Indica | 795 | 29.94% | 70.06% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 27.81% | 72.19% |
| Indica II | 212 | 13.68% | 86.32% |
| Indica Intermediate | 209 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610086326 | G->T | INTERGENIC | None |