Detailed information of SNP:
|
SNP ID:
sf0610087165(Gbrowse)
Chromosome: chr06 Position: 10087165 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 96.33% | 3.67% |
| All Indica | 780 | 94.10% | 5.90% |
| All Japonica | 486 | 99.18% | 0.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 87.96% | 12.04% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 89 | 97.75% | 2.25% |
| Japonica Intermediate | 63 | 96.83% | 3.17% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610087165 | A->T | INTERGENIC | None |