Detailed information of SNP:
|
SNP ID:
sf0610088142(Gbrowse)
Chromosome: chr06 Position: 10088142 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 84.02% | 15.98% |
| All Indica | 795 | 86.16% | 13.84% |
| All Japonica | 496 | 77.02% | 22.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 207 | 65.22% | 34.78% |
| Temperate Japonica | 334 | 67.37% | 32.63% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610088142 | T->C | INTERGENIC | None |