Detailed information of SNP:
|
SNP ID:
sf0610101602(Gbrowse)
Chromosome: chr06 Position: 10101602 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 72.71% | 27.29% |
| All Indica | 798 | 57.52% | 42.48% |
| All Japonica | 497 | 91.75% | 8.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 28.80% | 71.20% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 72.38% | 27.62% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610101602 | G->A | LOC_Os06g17410(LOC_Os06g17410.1) | UTR_3_PRIME |