Detailed information of SNP:
|
SNP ID:
sf0610102728(Gbrowse)
Chromosome: chr06 Position: 10102728 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 88.30% | 11.70% |
| All Indica | 799 | 84.48% | 15.52% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 76.27% | 23.73% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610102728 | A->G | INTERGENIC | None |