Detailed information of SNP:
|
SNP ID:
sf0610104889(Gbrowse)
Chromosome: chr06 Position: 10104889 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 81.76% | 18.24% |
| All Indica | 791 | 71.55% | 28.45% |
| All Japonica | 496 | 96.57% | 3.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 88.59% | 11.41% |
| Indica II | 212 | 31.13% | 68.87% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610104889 | C->T | INTERGENIC | None |