Detailed information of SNP:
|
SNP ID:
sf0610105991(Gbrowse)
Chromosome: chr06 Position: 10105991 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 73.57% | 26.43% |
| All Indica | 799 | 59.45% | 40.55% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 81.33% | 18.67% |
| Indica II | 213 | 18.78% | 81.22% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610105991 | T->C | INTERGENIC | None |