Detailed information of SNP:
|
SNP ID:
sf0610113267(Gbrowse)
Chromosome: chr06 Position: 10113267 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 81.61% | 18.39% |
| All Indica | 791 | 73.45% | 26.55% |
| All Japonica | 496 | 91.94% | 8.06% |
| Aus | 63 | 95.24% | 4.76% |
| Indica I | 371 | 74.12% | 25.88% |
| Indica II | 210 | 90.00% | 10.00% |
| Indica Intermediate | 210 | 55.71% | 44.29% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610113267 | T->C | INTERGENIC | None |