Detailed information of SNP:
|
SNP ID:
sf0610113800(Gbrowse)
Chromosome: chr06 Position: 10113800 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 57.52% | 42.48% |
| All Indica | 797 | 36.64% | 63.36% |
| All Japonica | 497 | 87.53% | 12.47% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 56.68% | 43.32% |
| Indica II | 213 | 6.10% | 93.90% |
| Indica Intermediate | 210 | 31.90% | 68.10% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610113800 | A->G | INTERGENIC | None |