Detailed information of SNP:
|
SNP ID:
sf0610114997(Gbrowse)
Chromosome: chr06 Position: 10114997 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 74.40% | 25.60% |
| All Indica | 798 | 59.40% | 40.60% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 79.68% | 20.32% |
| Indica II | 213 | 9.39% | 90.61% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610114997 | C->A | INTERGENIC | None |