Detailed information of SNP:
|
SNP ID:
sf0610115534(Gbrowse)
Chromosome: chr06 Position: 10115534 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 70.12% | 29.88% |
| All Indica | 799 | 56.45% | 43.55% |
| All Japonica | 497 | 88.93% | 11.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 66.40% | 33.60% |
| Indica II | 213 | 17.37% | 82.63% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610115534 | T->A | INTERGENIC | None |