Detailed information of SNP:
|
SNP ID:
sf0610117931(Gbrowse)
Chromosome: chr06 Position: 10117931 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 64.53% | 35.47% |
| All Indica | 798 | 48.87% | 51.13% |
| All Japonica | 497 | 87.73% | 12.27% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 63.90% | 36.10% |
| Indica II | 213 | 7.04% | 92.96% |
| Indica Intermediate | 211 | 64.45% | 35.55% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610117931 | C->G | INTERGENIC | None |