Detailed information of SNP:
|
SNP ID:
sf0610117959(Gbrowse)
Chromosome: chr06 Position: 10117959 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1278 | 59.86% | 40.14% |
| All Indica | 796 | 47.61% | 52.39% |
| All Japonica | 377 | 83.55% | 16.45% |
| Aus | 52 | 84.62% | 15.38% |
| Indica I | 373 | 64.08% | 35.92% |
| Indica II | 212 | 6.60% | 93.40% |
| Indica Intermediate | 211 | 59.72% | 40.28% |
| Temperate Japonica | 260 | 94.62% | 5.38% |
| Tropical Japonica | 74 | 55.41% | 44.59% |
| Japonica Intermediate | 43 | 65.12% | 34.88% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 35.00% | 65.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610117959 | C->T | INTERGENIC | None |