Detailed information of SNP:
|
SNP ID:
sf0610127419(Gbrowse)
Chromosome: chr06 Position: 10127419 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 64.57% | 35.43% |
| All Indica | 794 | 86.02% | 13.98% |
| All Japonica | 497 | 41.25% | 58.75% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 371 | 91.11% | 8.89% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 46.57% | 53.43% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610127419 | T->C | INTERGENIC | None |