Detailed information of SNP:
|
SNP ID:
sf0610131376(Gbrowse)
Chromosome: chr06 Position: 10131376 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 73.55% | 26.45% |
| All Indica | 791 | 58.91% | 41.09% |
| All Japonica | 496 | 95.56% | 4.44% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 373 | 78.55% | 21.45% |
| Indica II | 213 | 18.31% | 81.69% |
| Indica Intermediate | 205 | 65.37% | 34.63% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 88.17% | 11.83% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610131376 | G->A | INTERGENIC | None |