Detailed information of SNP:
|
SNP ID:
sf0610132021(Gbrowse)
Chromosome: chr06 Position: 10132021 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 89.63% | 10.37% |
| All Indica | 798 | 86.84% | 13.16% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 81.07% | 18.93% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610132021 | T->C | INTERGENIC | None |