Detailed information of SNP:
|
SNP ID:
sf0610133395(Gbrowse)
Chromosome: chr06 Position: 10133395 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 76.66% | 23.34% |
| All Indica | 799 | 64.33% | 35.67% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 82.93% | 17.07% |
| Indica II | 213 | 18.78% | 81.22% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610133395 | C->T | INTERGENIC | None |