Detailed information of SNP:
|
SNP ID:
sf0610134033(Gbrowse)
Chromosome: chr06 Position: 10134033 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 50.96% | 49.04% |
| All Indica | 797 | 36.76% | 63.24% |
| All Japonica | 496 | 67.14% | 32.86% |
| Aus | 61 | 100.00% | 0.00% |
| Indica I | 375 | 56.80% | 43.20% |
| Indica II | 212 | 6.60% | 93.40% |
| Indica Intermediate | 210 | 31.43% | 68.57% |
| Temperate Japonica | 335 | 66.57% | 33.43% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 40.54% | 59.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610134033 | A->T | INTERGENIC | None |