Detailed information of SNP:
|
SNP ID:
sf0610136002(Gbrowse)
Chromosome: chr06 Position: 10136002 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1341 | 74.35% | 25.65% |
| All Indica | 747 | 58.90% | 41.10% |
| All Japonica | 473 | 95.56% | 4.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 328 | 75.00% | 25.00% |
| Indica II | 211 | 17.54% | 82.46% |
| Indica Intermediate | 208 | 75.48% | 24.52% |
| Temperate Japonica | 333 | 98.20% | 1.80% |
| Tropical Japonica | 77 | 84.42% | 15.58% |
| Japonica Intermediate | 63 | 95.24% | 4.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610136002 | A->G | INTERGENIC | None |