Detailed information of SNP:
|
SNP ID:
sf0610136790(Gbrowse)
Chromosome: chr06 Position: 10136790 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 75.07% | 24.93% |
| All Indica | 796 | 61.68% | 38.32% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 373 | 78.55% | 21.45% |
| Indica II | 213 | 18.78% | 81.22% |
| Indica Intermediate | 210 | 75.24% | 24.76% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610136790 | C->T | INTERGENIC | None |