Detailed information of SNP:
|
SNP ID:
sf0610142044(Gbrowse)
Chromosome: chr06 Position: 10142044 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 78.92% | 21.08% |
| All Indica | 786 | 75.45% | 24.55% |
| All Japonica | 495 | 82.63% | 17.37% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 78.34% | 21.66% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 199 | 56.28% | 43.72% |
| Temperate Japonica | 333 | 84.68% | 15.32% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610142044 | T->C | INTERGENIC | None |