Detailed information of SNP:
|
SNP ID:
sf0610143954(Gbrowse)
Chromosome: chr06 Position: 10143954 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 62.55% | 37.45% |
| All Indica | 799 | 62.83% | 37.17% |
| All Japonica | 496 | 57.86% | 42.14% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 73.33% | 26.67% |
| Indica II | 213 | 62.91% | 37.09% |
| Indica Intermediate | 211 | 44.08% | 55.92% |
| Temperate Japonica | 335 | 52.84% | 47.16% |
| Tropical Japonica | 93 | 64.52% | 35.48% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610143954 | T->C | INTERGENIC | None |