Detailed information of SNP:
|
SNP ID:
sf0610144936(Gbrowse)
Chromosome: chr06 Position: 10144936 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 87.03% | 12.97% |
| All Indica | 799 | 83.23% | 16.77% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 80.80% | 19.20% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610144936 | A->T | INTERGENIC | None |