Detailed information of SNP:
|
SNP ID:
sf0610145211(Gbrowse)
Chromosome: chr06 Position: 10145211 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 91.45% | 8.55% |
| All Indica | 796 | 91.83% | 8.17% |
| All Japonica | 497 | 88.93% | 11.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 208 | 83.17% | 16.83% |
| Temperate Japonica | 335 | 84.78% | 15.22% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610145211 | C->T | INTERGENIC | None |