Detailed information of SNP:
|
SNP ID:
sf0610145261(Gbrowse)
Chromosome: chr06 Position: 10145261 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 67.28% | 32.72% |
| All Indica | 793 | 43.13% | 56.87% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 34.58% | 65.42% |
| Indica II | 210 | 43.81% | 56.19% |
| Indica Intermediate | 210 | 57.62% | 42.38% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610145261 | T->A | INTERGENIC | None |