Detailed information of SNP:
|
SNP ID:
sf0610146529(Gbrowse)
Chromosome: chr06 Position: 10146529 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 65.98% | 34.02% |
| All Indica | 798 | 70.93% | 29.07% |
| All Japonica | 496 | 54.44% | 45.56% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 76.00% | 24.00% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 210 | 69.05% | 30.95% |
| Temperate Japonica | 335 | 47.46% | 52.54% |
| Tropical Japonica | 93 | 65.59% | 34.41% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610146529 | T->C | LOC_Os06g17490(LOC_Os06g17490.1) | Non-Synonymous SNP |