Detailed information of SNP:
|
SNP ID:
sf0610147253(Gbrowse)
Chromosome: chr06 Position: 10147253 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 65.75% | 34.25% |
| All Indica | 797 | 70.51% | 29.49% |
| All Japonica | 496 | 54.64% | 45.36% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 75.67% | 24.33% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 210 | 68.57% | 31.43% |
| Temperate Japonica | 335 | 47.46% | 52.54% |
| Tropical Japonica | 93 | 65.59% | 34.41% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610147253 | T->G | LOC_Os06g17490(LOC_Os06g17490.1) | Synonymous |