Detailed information of SNP:
|
SNP ID:
sf0610148150(Gbrowse)
Chromosome: chr06 Position: 10148150 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 84.50% | 15.50% |
| All Indica | 799 | 88.11% | 11.89% |
| All Japonica | 497 | 75.45% | 24.55% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 65.07% | 34.93% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610148150 | A->C | LOC_Os06g17490(LOC_Os06g17490.1) | UTR_3_PRIME |