Detailed information of SNP:
|
SNP ID:
sf0610150700(Gbrowse)
Chromosome: chr06 Position: 10150700 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 85.34% | 14.66% |
| All Indica | 799 | 88.11% | 11.89% |
| All Japonica | 490 | 77.96% | 22.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 328 | 68.90% | 31.10% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610150700 | A->G | LOC_Os06g17500(LOC_Os06g17500.1) | Non-Synonymous SNP |