Detailed information of SNP:
|
SNP ID:
sf0610181859(Gbrowse)
Chromosome: chr06 Position: 10181859 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 73.89% | 26.11% |
| All Indica | 798 | 78.32% | 21.68% |
| All Japonica | 493 | 61.26% | 38.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 81.28% | 18.72% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 54.03% | 45.97% |
| Temperate Japonica | 334 | 52.10% | 47.90% |
| Tropical Japonica | 92 | 78.26% | 21.74% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610181859 | A->C | INTERGENIC | None |