Detailed information of SNP:
|
SNP ID:
sf0610182025(Gbrowse)
Chromosome: chr06 Position: 10182025 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 74.89% | 25.11% |
| All Indica | 794 | 79.47% | 20.53% |
| All Japonica | 489 | 62.37% | 37.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 82.09% | 17.91% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 207 | 56.04% | 43.96% |
| Temperate Japonica | 327 | 53.52% | 46.48% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610182025 | G->C | INTERGENIC | None |