Detailed information of SNP:
|
SNP ID:
sf0610182384(Gbrowse)
Chromosome: chr06 Position: 10182384 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 73.09% | 26.91% |
| All Indica | 797 | 78.29% | 21.71% |
| All Japonica | 496 | 59.27% | 40.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 80.97% | 19.03% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 54.03% | 45.97% |
| Temperate Japonica | 334 | 50.00% | 50.00% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610182384 | T->C | INTERGENIC | None |