Detailed information of SNP:
|
SNP ID:
sf0610182549(Gbrowse)
Chromosome: chr06 Position: 10182549 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 73.86% | 26.14% |
| All Indica | 789 | 79.59% | 20.41% |
| All Japonica | 496 | 59.48% | 40.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 82.48% | 17.52% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 205 | 55.61% | 44.39% |
| Temperate Japonica | 334 | 50.00% | 50.00% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610182549 | A->G | INTERGENIC | None |