Detailed information of SNP:
|
SNP ID:
sf0610196478(Gbrowse)
Chromosome: chr06 Position: 10196478 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 55.83% | 44.17% |
| All Indica | 795 | 75.47% | 24.53% |
| All Japonica | 497 | 35.01% | 64.99% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 372 | 79.57% | 20.43% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 210 | 71.43% | 28.57% |
| Temperate Japonica | 335 | 50.15% | 49.85% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610196478 | G->A | INTERGENIC | None |