Detailed information of SNP:
|
SNP ID:
sf0610204290(Gbrowse)
Chromosome: chr06 Position: 10204290 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 85.62% | 14.38% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 497 | 75.05% | 24.95% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 64.78% | 35.22% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610204290 | T->C | INTERGENIC | None |