Detailed information of SNP:
|
SNP ID:
sf0610210070(Gbrowse)
Chromosome: chr06 Position: 10210070 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 85.96% | 14.04% |
| All Indica | 797 | 92.47% | 7.53% |
| All Japonica | 497 | 75.05% | 24.95% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 64.78% | 35.22% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610210070 | A->G | LOC_Os06g17590(LOC_Os06g17590.1) | Non-Synonymous SNP |