Detailed information of SNP:
|
SNP ID:
sf0610210071(Gbrowse)
Chromosome: chr06 Position: 10210071 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 95.35% | 4.65% |
| All Indica | 798 | 94.36% | 5.64% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610210071 | T->C | LOC_Os06g17590(LOC_Os06g17590.1) | Synonymous |