Detailed information of SNP:
|
SNP ID:
sf0610211567(Gbrowse)
Chromosome: chr06 Position: 10211567 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 67.58% | 32.42% |
| All Indica | 799 | 65.83% | 34.17% |
| All Japonica | 497 | 66.80% | 33.20% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 77.33% | 22.67% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 211 | 46.92% | 53.08% |
| Temperate Japonica | 335 | 62.69% | 37.31% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610211567 | T->C | INTERGENIC | None |