Detailed information of SNP:
|
SNP ID:
sf0610250689(Gbrowse)
Chromosome: chr06 Position: 10250689 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 65.37% | 34.63% |
| All Indica | 797 | 42.03% | 57.97% |
| All Japonica | 474 | 98.73% | 1.27% |
| Aus | 61 | 100.00% | 0.00% |
| Indica I | 374 | 29.95% | 70.05% |
| Indica II | 212 | 40.57% | 59.43% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 313 | 98.08% | 1.92% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 72.97% | 27.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610250689 | A->T | LOC_Os06g17650(LOC_Os06g17650.1) | INTRON |