Detailed information of SNP:
|
SNP ID:
sf0610272792(Gbrowse)
Chromosome: chr06 Position: 10272792 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 67.09% | 32.91% |
| All Indica | 799 | 70.59% | 29.41% |
| All Japonica | 497 | 57.75% | 42.25% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 78.93% | 21.07% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 48.96% | 51.04% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610272792 | A->G | INTERGENIC | None |