Detailed information of SNP:
|
SNP ID:
sf0610277153(Gbrowse)
Chromosome: chr06 Position: 10277153 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 70.59% | 29.41% |
| All Indica | 798 | 92.23% | 7.77% |
| All Japonica | 497 | 45.27% | 54.73% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 52.24% | 47.76% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610277153 | T->C | INTERGENIC | None |