Detailed information of SNP:
|
SNP ID:
sf0610277394(Gbrowse)
Chromosome: chr06 Position: 10277394 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1337 | 84.29% | 15.71% |
| All Indica | 717 | 71.13% | 28.87% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 325 | 51.69% | 48.31% |
| Indica II | 194 | 88.66% | 11.34% |
| Indica Intermediate | 198 | 85.86% | 14.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610277394 | A->G | INTERGENIC | None |