Detailed information of SNP:
|
SNP ID:
sf0610283245(Gbrowse)
Chromosome: chr06 Position: 10283245 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 61.78% | 38.22% |
| All Indica | 798 | 79.82% | 20.18% |
| All Japonica | 497 | 41.25% | 58.75% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 90.37% | 9.63% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 50.45% | 49.55% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610283245 | G->A | INTERGENIC | None |