Detailed information of SNP:
|
SNP ID:
sf0610283542(Gbrowse)
Chromosome: chr06 Position: 10283542 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 51.98% | 48.02% |
| All Indica | 797 | 23.59% | 76.41% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 373 | 15.55% | 84.45% |
| Indica II | 213 | 11.27% | 88.73% |
| Indica Intermediate | 211 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610283542 | C->T | INTERGENIC | None |