Detailed information of SNP:
|
SNP ID:
sf0610284088(Gbrowse)
Chromosome: chr06 Position: 10284088 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 52.26% | 47.74% |
| All Indica | 799 | 23.78% | 76.22% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 13.60% | 86.40% |
| Indica II | 213 | 14.08% | 85.92% |
| Indica Intermediate | 211 | 51.66% | 48.34% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610284088 | C->T | INTERGENIC | None |